Spectrophotometer

Reference Designator
CE01ISSM-RID16-01-OPTAAD000
Start Depth
7
End Depth
7
Location
Near Surface Instrument Frame
Current Status
Review Complete
Class
OPTAA (Absorption Spectrophotometer)
Series
OPTAA-D
Science Discipline
Biological
Make
WET Labs
Model
AC-S
M2M Example
https://ooinet.oceanobservatories.org/api/m2m/12576/sensor/inv/CE01ISSM/RID16/01-OPTAAD000/metadata
Method Data Stream Content Type
recovered_host optaa_dj_dcl_instrument_recovered Data Products Report M2M Stats Science
recovered_host optaa_dj_dcl_metadata_recovered Metadata Report M2M Engineering
telemetered optaa_dj_dcl_instrument Data Products Report M2M Stats Science
telemetered optaa_dj_dcl_metadata Metadata Report M2M Engineering
Deployment Cruise Start Date Stop Date Mooring Asset Node Asset Sensor Asset Latitude Longitude Deployment Depth Water Depth
1 Review OC1404B 04/17/2014 08/16/2014 CGMCE-01ISSM-00001 CGINS-OPTAAD-00135 44.6583 -124.096 7 25
2 Review OC1410A 10/10/2014 04/12/2015 CGMCE-01ISSM-00002 CGINS-OPTAAD-00170 44.6583 -124.096 7 25
3 Review PS1506A 06/03/2015 10/07/2015 CGMCE-01ISSM-00003 CGINS-OPTAAD-00214 44.6583 -124.095 7 25
4 Review OC1510A 10/08/2015 05/10/2016 CGMCE-01ISSM-00004 CGINS-OPTAAD-00136 44.6601 -124.096 7 25
5 Review TN-342 05/18/2016 10/02/2016 CGMCE-01ISSM-00005 CGINS-OPTAAD-00179 44.6583 -124.095 7 24
7 Review SKQ201704S 04/19/2017 10/12/2017 CGMCE-01ISSM-00007 CGINS-OPTAAD-00183 44.6563 -124.095 7 25
8 Review SKQ201715S 10/12/2017 04/01/2018 CGMCE-01ISSM-00008 CGINS-OPTAAD-00149 44.6597 -124.095 7 25
9 Review SKQ201808S 04/03/2018 09/30/2018 CGMCE-01ISSM-00009 CGINS-OPTAAJ-00168 44.6568 -124.096 7 25
10 Review SR1813 09/29/2018 04/27/2019 CGMCE-01ISSM-00010 CGINS-OPTAAD-00267 44.6598 -124.095 7 25
11 Review SKQ201910S 04/20/2019 10/22/2019 CGMCE-01ISSM-00011 CGINS-OPTAAD-00170 44.6568 -124.095 7 25
12 Review SKQ201921S 10/20/2019 CGMCE-01ISSM-00012 CGINS-OPTAAD-00154 44.6598 -124.095 7 25
Metadata Start Date End Date Comment
CE01ISSM-RID16-01-OPTAAD000

According to Roesler and Barnard (Optical proxy for phytoplankton biomass in the absence of photophysiology: Rethinking the absorption line height, Methods in Oceanography, 2013), “absorption meters are highly prone to biofouling, particularly biofilms which not only attenuate the collimated beam but also impact the scattering properties of the optical surfaces and tubes. In productive coastal waters biofouling can have significant impacts (i.e. 10% of the signal) within one to two weeks”.

By Lori Garzio, on 6/21/19

CE01ISSM-RID16-01-OPTAAD000

There is no pressure variable in the .nc files. This should be a coordinate.

By Lori Garzio, on 6/21/19

CE01ISSM-RID16-01-OPTAAD000
Deployment: 1

optical_absorption and beam_attenuation are arrays of all fill values. According to the computed_provenance in the provenance.json file, practical salinity and temp are missing from the ctdbp_cdef_dcl_instrument_recovered data stream.

By Lori Garzio, on 6/21/19

CE01ISSM-RID16-01-OPTAAD000
Deployment: 7

For deployment 7, 50% and 54% of the values for beam_attenuation and optical_absorption, respectively, are fill values, outliers (+/- 5 SD) or outside of global ranges.

By Lori Garzio, on 6/21/19

CE01ISSM-RID16-01-OPTAAD000
Deployment: 8

Missing data from deployment 8 should be annotated.

By Lori Garzio, on 6/21/19

New Note

Metadata Start Date End Date Comment
CE01ISSM-RID16-01-OPTAAD000
4/17/14, 4:45 PM

Per vendor feedback, the first 1-2 min of each OPTAA instrument sampling period should be considered suspect. Signal drift can occur as the instrument warms up, flushes with seawater, and the filter wheel spins up. Users are encouraged to delete the first minute of data, at a minimum, from each measurement burst and then calculate a median average of the remaining data from the burst before working further with the OPTAA data.

Id: 2094 By: wingardc

CE01ISSM
4/17/14, 4:45 PM 9/30/16, 8:00 PM

All of the inshore surface moorings suffer from an issue called the 'top of the day problem.' A race condition exists in the CPM firmware when transferring daily log files harvested from the various sub-components in a buoy system (e.g. DCL16, CPM3, DCL35, etc) over the Iridium RUDICS connection. The primary CPM rsync's data files from the various sub-components to a central data directory. The first time a daily file is created/copied into that directory (usually shortly after midnight), a compressed copy of the file is created and that compressed file is queued up in a separate text file for transmission to shore. The transfer routine reads that text file and processes the files from that list in order from top to bottom. Once that compressed file is transferred to shore, no further updates for that file are sent to shore. Meanwhile, the CPM continues to rsync data from the different sub-components, updating the original daily log file. The net result is that data is accumulating in the daily log file for an instrument, but we may see only one record (or none) depending on when the rsync job occurred and the compressed file was created and staged for transfer to shore. This affects telemetered data only.

Id: 868 By: michaesm

CE01ISSM-RID16-01-OPTAAD000
7/27/16, 8:00 PM 10/1/16, 8:00 PM

Port was overcurrenting, so mission file changed to disable instrument.

Id: 854 By: michaesm
Flag: not_operational Exclude: No

CE01ISSM
8/7/16, 8:00 PM 10/3/16, 8:00 PM

Correcting the iridium data telemetry issues, permitting full telemetry of data files, resulting in greater power consumption than anticipated. Result is power level of the battery pack has dropped below operational limits and subsystems can no longer power instruments. Shutting the mooring down, and placing in a low power maintenance mode.

Id: 869 By: michaesm
Flag: not_operational Exclude: No

CE01ISSM-RID16-01-OPTAAD000
9/30/16, 8:00 PM 4/30/17, 8:00 PM

Instrument not deployed during Fall 2016 cruise because its refurbishment was not complete before the cruise.

Id: 1523 By: michaesm
Flag: not_operational Exclude: No

CE01ISSM
12/11/16, 7:00 PM 5/30/17, 8:00 PM

On Monday, Mon Dec 12 15:30:00 2016, stopped receiving any data from CTDBP3. No indication as to possible cause.

Id: 870 By: michaesm
Flag: not_operational Exclude: No

CE01ISSM
2/5/17, 7:00 PM 4/30/17, 8:00 PM

The buoy and mfn battery voltages have been drawn down faster than expected. Have shutdown further power to DCL16, DCL17, CPM3, and DCL37 (DCL35 failed several weeks ago). This takes the following instruments offline:
DCL16
CTDBP + DOSTA (probably internally recording)
FLORTNUTNR (probably internally recording)
PHSEN (probably internally recording)
PCO2W (probably internally recording)
OPTAA
SPKIR
VELPT (probably internally recording)

DCL17
MOPAK
CTDBP + FLORT
VELPT (probably internally recording)
ACOMM
DCL35
ADCPT (probably internally recording)
PCO2W (probably internally recording)
PHSEN (probably internally recording)
PRESF (probably internally recording)
VEL3D (probably internally recording)
DCL37
CTDBP + DOSTA (probably internally recording)
OPTAA
ZPLSC (probably internally recording)

Id: 871 By: michaesm
Flag: not_available Exclude: No

CE01ISSM-RID16
Method: telemetered
1/11/20, 1:45 PM

During a large storm event on 2020-01-11, the surface buoy and NSIF broke free and went adrift. The buoy and NSIF were recovered from the beach the following mooring. No further data will be collected from these systems for the remainder of this deployment.

Id: 1893 By: wingardc
Flag: not_operational Exclude: No